# Copyright 2017 Google Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
#     http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.

# NOTE: This class is auto generated by the swagger code generator program.
# https://github.com/swagger-api/swagger-codegen.git
# Do not edit the class manually.

defmodule GoogleApi.Genomics.V1.Model.LinearAlignment do
  @moduledoc """
  A linear alignment can be represented by one CIGAR string. Describes the mapped position and local alignment of the read to the reference.

  ## Attributes

  - cigar ([CigarUnit]): Represents the local alignment of this sequence (alignment matches, indels, etc) against the reference. Defaults to: `null`.
  - mappingQuality (integer()): The mapping quality of this alignment. Represents how likely the read maps to this position as opposed to other locations.  Specifically, this is -10 log10 Pr(mapping position is wrong), rounded to the nearest integer. Defaults to: `null`.
  - position (Position): The position of this alignment. Defaults to: `null`.
  """

  use GoogleApi.Gax.ModelBase

  @type t :: %__MODULE__{
          :cigar => list(GoogleApi.Genomics.V1.Model.CigarUnit.t()),
          :mappingQuality => any(),
          :position => GoogleApi.Genomics.V1.Model.Position.t()
        }

  field(:cigar, as: GoogleApi.Genomics.V1.Model.CigarUnit, type: :list)
  field(:mappingQuality)
  field(:position, as: GoogleApi.Genomics.V1.Model.Position)
end

defimpl Poison.Decoder, for: GoogleApi.Genomics.V1.Model.LinearAlignment do
  def decode(value, options) do
    GoogleApi.Genomics.V1.Model.LinearAlignment.decode(value, options)
  end
end

defimpl Poison.Encoder, for: GoogleApi.Genomics.V1.Model.LinearAlignment do
  def encode(value, options) do
    GoogleApi.Gax.ModelBase.encode(value, options)
  end
end