defmodule Codicil do
  @moduledoc """
  Semantic code search and analysis for Elixir projects via MCP (Model Context Protocol).

  Codicil provides AI coding assistants with deep semantic understanding of your codebase through:

  - **Semantic function search** - Find code by describing what it does in natural language
  - **Dependency analysis** - Trace function call graphs and module relationships
  - **Automatic indexing** - Hooks into compilation to analyze code as you build
  - **Multi-LLM support** - Works with Anthropic Claude, OpenAI, Cohere, Google Gemini, and Grok

  ## Quick Start

  ### 1. Add Codicil to your dependencies

  ```elixir
  def deps do
    [
      {:codicil, "~> 0.1", only: [:dev, :test]}
    ]
  end
  ```

  ### 2. Initialize the database

  ```bash
  mix deps.get
  mix ecto.create -r Codicil.Db.Repo
  mix ecto.migrate -r Codicil.Db.Repo
  ```

  ### 3. Configure environment variables

  ```bash
  export CODICIL_LLM_PROVIDER=openai  # or: anthropic, cohere, google, grok
  export OPENAI_API_KEY=your_key_here

  # Optional: Separate embeddings provider (defaults to openai)
  # export CODICIL_EMBEDDING_PROVIDER=voyage
  # export VOYAGE_API_KEY=your_voyage_key_here
  ```

  ### 4. Enable the compiler tracer

  Edit your `mix.exs`:

  ```elixir
  def project do
    [
      app: :my_app,
      elixirc_options: elixirc_options(Mix.env()),
      deps: deps()
    ]
  end

  defp elixirc_options(:prod), do: []
  defp elixirc_options(_env), do: [tracers: [Codicil.Tracer]]
  ```

  ### 5. Set up the MCP endpoint

  **For Phoenix projects**, add to your endpoint:

  ```elixir
  if Code.ensure_loaded?(Codicil) do
    plug Codicil.Plug
  end
  ```

  **For non-Phoenix projects**, add Bandit and a Mix alias:

  ```elixir
  # In deps
  {:bandit, "~> 1.6", only: :dev}

  # In aliases
  codicil: "run --no-halt -e 'Bandit.start_link(plug: Codicil.Plug, port: 4700)'"
  ```

  Then run `mix codicil` to start the MCP server.

  ### 6. Compile your project

  ```bash
  mix compile --force
  ```

  Codicil will automatically index your code and make it available to AI assistants.

  ## MCP Tools

  Once configured, your AI assistant can use these tools:

  - `similar_functions` - Find functions by semantic description
  - `function_callers` - Find what calls a specific function
  - `function_callees` - Find what a function calls
  - `module_relationships` - Analyze module dependencies

  ## Configuration

  Set these environment variables to customize Codicil:

  - `CODICIL_LLM_PROVIDER` - LLM provider (required): `openai`, `anthropic`, `cohere`, `google`, `grok`
  - `CODICIL_LLM_MODEL` - Override default model for summaries
  - `CODICIL_EMBEDDING_PROVIDER` - Separate provider for embeddings (defaults to same as LLM provider)
  - `CODICIL_EMBEDDING_MODEL` - Override default embedding model

  Provider-specific API keys:
  - `OPENAI_API_KEY` - For OpenAI (default)
  - `OPENAI_BASE_URL` - For OpenAI-compatible local models (e.g., Ollama)
  - `ANTHROPIC_API_KEY` - For Anthropic Claude
  - `VOYAGE_API_KEY` - For Voyage AI embeddings (if using voyage provider)
  - `COHERE_API_KEY` - For Cohere
  - `GOOGLE_API_KEY` - For Google Gemini

  ## How It Works

  Codicil uses Elixir's compiler tracer system to capture code structure during compilation:

  1. `Codicil.Tracer` receives compilation events for all modules and functions
  2. Extracted metadata is processed by `Codicil.ModuleTracer` GenServers
  3. `Codicil.RateLimiter` queues functions for LLM processing (rate-limited)
  4. Summaries and embeddings are generated and stored in SQLite
  5. `Codicil.FileWatcher` monitors file changes and triggers recompilation
  6. AI assistants query the indexed code via MCP tools through `Codicil.Plug`

  ## Production Warning

  **DO NOT deploy Codicil to production.** It is a development tool that:
  - Makes LLM API calls (costs money)
  - Indexes code at runtime (performance overhead)
  - Runs an HTTP server (security surface)

  Always include Codicil as a `:dev` and `:test` only dependency.

  ## Documentation

  For detailed setup instructions, troubleshooting, and advanced configuration, see:
  - [README.md](readme.html) - Complete installation and setup guide
  - [MCP Protocol Spec](https://spec.modelcontextprotocol.io) - Model Context Protocol specification
  """
end