google_api_genomics v0.5.0 GoogleApi.Genomics.V1.Model.VariantAnnotation View Source
Attributes
- alternateBases (String.t): The alternate allele for this variant. If multiple alternate alleles exist at this location, create a separate variant for each one, as they may represent distinct conditions. Defaults to:
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. clinicalSignificance (String.t): Describes the clinical significance of a variant. It is adapted from the ClinVar controlled vocabulary for clinical significance described at: http://www.ncbi.nlm.nih.gov/clinvar/docs/clinsig/ Defaults to:
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.- Enum - one of [CLINICAL_SIGNIFICANCE_UNSPECIFIED, CLINICAL_SIGNIFICANCE_OTHER, UNCERTAIN, BENIGN, LIKELY_BENIGN, LIKELY_PATHOGENIC, PATHOGENIC, DRUG_RESPONSE, HISTOCOMPATIBILITY, CONFERS_SENSITIVITY, RISK_FACTOR, ASSOCIATION, PROTECTIVE, MULTIPLE_REPORTED]
- conditions ([ClinicalCondition]): The set of conditions associated with this variant. A condition describes the way a variant influences human health. Defaults to:
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. effect (String.t): Effect of the variant on the coding sequence. Defaults to:
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.- Enum - one of [EFFECT_UNSPECIFIED, EFFECT_OTHER, FRAMESHIFT, FRAME_PRESERVING_INDEL, SYNONYMOUS_SNP, NONSYNONYMOUS_SNP, STOP_GAIN, STOP_LOSS, SPLICE_SITE_DISRUPTION]
- geneId (String.t): Google annotation ID of the gene affected by this variant. This should be provided when the variant is created. Defaults to:
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. - transcriptIds ([String.t]): Google annotation IDs of the transcripts affected by this variant. These should be provided when the variant is created. Defaults to:
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. type (String.t): Type has been adapted from ClinVar's list of variant types. Defaults to:
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.- Enum - one of [TYPE_UNSPECIFIED, TYPE_OTHER, INSERTION, DELETION, SUBSTITUTION, SNP, STRUCTURAL, CNV]
Link to this section Summary
Functions
Unwrap a decoded JSON object into its complex fields.
Link to this section Types
Link to this section Functions
Link to this function
decode(value, options) View Source
Unwrap a decoded JSON object into its complex fields.