google_api_genomics v0.4.0 GoogleApi.Genomics.V1.Model.Reference View Source

A reference is a canonical assembled DNA sequence, intended to act as a reference coordinate space for other genomic annotations. A single reference might represent the human chromosome 1 or mitochandrial DNA, for instance. A reference belongs to one or more reference sets.

Attributes

  • id (String.t): The server-generated reference ID, unique across all references. Defaults to: null.
  • length (String.t): The length of this reference's sequence. Defaults to: null.
  • md5checksum (String.t): MD5 of the upper-case sequence excluding all whitespace characters (this is equivalent to SQ:M5 in SAM). This value is represented in lower case hexadecimal format. Defaults to: null.
  • name (String.t): The name of this reference, for example `22`. Defaults to: null.
  • ncbiTaxonId (integer()): ID from http://www.ncbi.nlm.nih.gov/taxonomy. For example, 9606 for human. Defaults to: null.
  • sourceAccessions ([String.t]): All known corresponding accession IDs in INSDC (GenBank/ENA/DDBJ) ideally with a version number, for example `GCF_000001405.26`. Defaults to: null.
  • sourceUri (String.t): The URI from which the sequence was obtained. Typically specifies a FASTA format file. Defaults to: null.

Link to this section Summary

Functions

Unwrap a decoded JSON object into its complex fields.

Link to this section Types

Link to this type

t() View Source
t() :: %GoogleApi.Genomics.V1.Model.Reference{
  id: any(),
  length: any(),
  md5checksum: any(),
  name: any(),
  ncbiTaxonId: any(),
  sourceAccessions: [any()],
  sourceUri: any()
}

Link to this section Functions

Link to this function

decode(value, options) View Source
decode(struct(), keyword()) :: struct()

Unwrap a decoded JSON object into its complex fields.