google_api_genomics v0.4.0 GoogleApi.Genomics.V1.Model.Reference View Source
A reference is a canonical assembled DNA sequence, intended to act as a reference coordinate space for other genomic annotations. A single reference might represent the human chromosome 1 or mitochandrial DNA, for instance. A reference belongs to one or more reference sets.
Attributes
- id (String.t): The server-generated reference ID, unique across all references. Defaults to:
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. - length (String.t): The length of this reference's sequence. Defaults to:
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. - md5checksum (String.t): MD5 of the upper-case sequence excluding all whitespace characters (this is equivalent to SQ:M5 in SAM). This value is represented in lower case hexadecimal format. Defaults to:
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. - name (String.t): The name of this reference, for example `22`. Defaults to:
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. - ncbiTaxonId (integer()): ID from http://www.ncbi.nlm.nih.gov/taxonomy. For example, 9606 for human. Defaults to:
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. - sourceAccessions ([String.t]): All known corresponding accession IDs in INSDC (GenBank/ENA/DDBJ) ideally with a version number, for example `GCF_000001405.26`. Defaults to:
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. - sourceUri (String.t): The URI from which the sequence was obtained. Typically specifies a FASTA format file. Defaults to:
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.
Link to this section Summary
Functions
Unwrap a decoded JSON object into its complex fields.
Link to this section Types
Link to this section Functions
Link to this function
decode(value, options) View Source
Unwrap a decoded JSON object into its complex fields.