google_api_genomics v0.4.0 GoogleApi.Genomics.V1.Model.LinearAlignment View Source
A linear alignment can be represented by one CIGAR string. Describes the mapped position and local alignment of the read to the reference.
Attributes
- cigar ([CigarUnit]): Represents the local alignment of this sequence (alignment matches, indels, etc) against the reference. Defaults to:
null
. - mappingQuality (integer()): The mapping quality of this alignment. Represents how likely the read maps to this position as opposed to other locations. Specifically, this is -10 log10 Pr(mapping position is wrong), rounded to the nearest integer. Defaults to:
null
. - position (Position): The position of this alignment. Defaults to:
null
.
Link to this section Summary
Functions
Unwrap a decoded JSON object into its complex fields.
Link to this section Types
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t()
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t()
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t() :: %GoogleApi.Genomics.V1.Model.LinearAlignment{
cigar: [GoogleApi.Genomics.V1.Model.CigarUnit.t()],
mappingQuality: any(),
position: GoogleApi.Genomics.V1.Model.Position.t()
}
t() :: %GoogleApi.Genomics.V1.Model.LinearAlignment{ cigar: [GoogleApi.Genomics.V1.Model.CigarUnit.t()], mappingQuality: any(), position: GoogleApi.Genomics.V1.Model.Position.t() }
Link to this section Functions
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decode(value, options) View Source
Unwrap a decoded JSON object into its complex fields.