google_api_genomics v0.4.0 GoogleApi.Genomics.V1.Model.LinearAlignment View Source

A linear alignment can be represented by one CIGAR string. Describes the mapped position and local alignment of the read to the reference.

Attributes

  • cigar ([CigarUnit]): Represents the local alignment of this sequence (alignment matches, indels, etc) against the reference. Defaults to: null.
  • mappingQuality (integer()): The mapping quality of this alignment. Represents how likely the read maps to this position as opposed to other locations. Specifically, this is -10 log10 Pr(mapping position is wrong), rounded to the nearest integer. Defaults to: null.
  • position (Position): The position of this alignment. Defaults to: null.

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Functions

Unwrap a decoded JSON object into its complex fields.

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t() View Source
t() :: %GoogleApi.Genomics.V1.Model.LinearAlignment{
  cigar: [GoogleApi.Genomics.V1.Model.CigarUnit.t()],
  mappingQuality: any(),
  position: GoogleApi.Genomics.V1.Model.Position.t()
}

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decode(value, options) View Source
decode(struct(), keyword()) :: struct()

Unwrap a decoded JSON object into its complex fields.