google_api_genomics v0.0.1 GoogleApi.Genomics.V1.Model.Reference View Source

A reference is a canonical assembled DNA sequence, intended to act as a reference coordinate space for other genomic annotations. A single reference might represent the human chromosome 1 or mitochandrial DNA, for instance. A reference belongs to one or more reference sets. For more genomics resource definitions, see Fundamentals of Google Genomics

Attributes

  • id (String): The server-generated reference ID, unique across all references. Defaults to: null.
  • length (String): The length of this reference's sequence. Defaults to: null.
  • md5checksum (String): MD5 of the upper-case sequence excluding all whitespace characters (this is equivalent to SQ:M5 in SAM). This value is represented in lower case hexadecimal format. Defaults to: null.
  • name (String): The name of this reference, for example `22`. Defaults to: null.
  • ncbiTaxonId (Integer): ID from http://www.ncbi.nlm.nih.gov/taxonomy. For example, 9606 for human. Defaults to: null.
  • sourceAccessions (List[String]): All known corresponding accession IDs in INSDC (GenBank/ENA/DDBJ) ideally with a version number, for example `GCF_000001405.26`. Defaults to: null.
  • sourceUri (String): The URI from which the sequence was obtained. Typically specifies a FASTA format file. Defaults to: null.