google_api_genomics v0.0.1 GoogleApi.Genomics.V1.Model.ReferenceSet View Source
A reference set is a set of references which typically comprise a reference assembly for a species, such as `GRCh38` which is representative of the human genome. A reference set defines a common coordinate space for comparing reference-aligned experimental data. A reference set contains 1 or more references. For more genomics resource definitions, see Fundamentals of Google Genomics
Attributes
- assemblyId (String): Public id of this reference set, such as `GRCh37`. Defaults to:
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. - description (String): Free text description of this reference set. Defaults to:
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. - id (String): The server-generated reference set ID, unique across all reference sets. Defaults to:
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. - md5checksum (String): Order-independent MD5 checksum which identifies this reference set. The checksum is computed by sorting all lower case hexidecimal string `reference.md5checksum` (for all reference in this set) in ascending lexicographic order, concatenating, and taking the MD5 of that value. The resulting value is represented in lower case hexadecimal format. Defaults to:
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. - ncbiTaxonId (Integer): ID from http://www.ncbi.nlm.nih.gov/taxonomy (for example, 9606 for human) indicating the species which this reference set is intended to model. Note that contained references may specify a different `ncbiTaxonId`, as assemblies may contain reference sequences which do not belong to the modeled species, for example EBV in a human reference genome. Defaults to:
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. - referenceIds (List[String]): The IDs of the reference objects that are part of this set. `Reference.md5checksum` must be unique within this set. Defaults to:
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. - sourceAccessions (List[String]): All known corresponding accession IDs in INSDC (GenBank/ENA/DDBJ) ideally with a version number, for example `NC_000001.11`. Defaults to:
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. - sourceUri (String): The URI from which the references were obtained. Defaults to:
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.