google_api_genomics v0.0.1 GoogleApi.Genomics.V1.Model.LinearAlignment View Source

A linear alignment can be represented by one CIGAR string. Describes the mapped position and local alignment of the read to the reference.

Attributes

  • cigar (List[CigarUnit]): Represents the local alignment of this sequence (alignment matches, indels, etc) against the reference. Defaults to: null.
  • mappingQuality (Integer): The mapping quality of this alignment. Represents how likely the read maps to this position as opposed to other locations. Specifically, this is -10 log10 Pr(mapping position is wrong), rounded to the nearest integer. Defaults to: null.
  • position (Position): The position of this alignment. Defaults to: null.