google_api_genomics v0.0.1 GoogleApi.Genomics.V1.Model.ImportVariantsRequest View Source

The variant data import request.

Attributes

  • format (String): The format of the variant data being imported. If unspecified, defaults to to `VCF`. Defaults to: null.

    • Enum - one of [FORMAT_UNSPECIFIED, FORMAT_VCF, FORMAT_COMPLETE_GENOMICS]
  • infoMergeConfig (Map[String, String]): A mapping between info field keys and the InfoMergeOperations to be performed on them. This is plumbed down to the MergeVariantRequests generated by the resulting import job. Defaults to: null.

    • Enum - one of
  • normalizeReferenceNames (Boolean): Convert reference names to the canonical representation. hg19 haploytypes (those reference names containing "_hap") are not modified in any way. All other reference names are modified according to the following rules: The reference name is capitalized. The "chr" prefix is dropped for all autosomes and sex chromsomes. For example "chr17" becomes "17" and "chrX" becomes "X". All mitochondrial chromosomes ("chrM", "chrMT", etc) become "MT". Defaults to: null.
  • sourceUris (List[String]): A list of URIs referencing variant files in Google Cloud Storage. URIs can include wildcards as described here. Note that recursive wildcards ('**') are not supported. Defaults to: null.
  • variantSetId (String): Required. The variant set to which variant data should be imported. Defaults to: null.